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Quantum chemical benchmark studies of the electronic properties of
the green fluorescent protein chromophore: II. Cis-trans isomerization
in water
I. Polyakov, E. Epifanovsky, B. Grigorenko, A.I. Krylov, and A.V. Nemukhin J. Chem. Theor. Comput. 5, 1907 – 1914
(2009)
We present quantum chemical calculations of the properties of the anionic form of the
green fluorescent protein (GFP) chromophore that can be directly compared to the results
of experimental measurements: the cis-trans isomerization energy profile in water.
Calculations of the cis-trans chromophore isomerization pathway in the gas phase
and in water reveal a problematic behavior of DFT and SOS-MP2 due to the
multiconfigurational character of the wave function at twisted geometries. The
solvent effects treated with
the continuum solvation models, as well as with the water cluster model,
are found to be important and can reduce the activation energy by more than 10 kcal/mol.
Strong solvent effects are explained by the change in charge localization patterns a
long the isomerization coordinate. At the equilibrium, the negative charge is
almost equally delocalized between the phenyl and imidazolin rings
due to the interaction of two resonance structures, whereas at the transition state the
charge is localized on the imidazolin moiety.
Our best estimate of the barrier obtained in cluster calculations employing the
effective fragment
potential-based QM/MM method with the CASSCF description of the chromophore augmented by
perturbation theory correction and the
TIP3P water model is 14.8 kcal/mol, which is in excellent agreement with the experimental
value of 15.4 kcal/mol. This result helps resolve previously reported disagreement
between experimental measurements and theoretical estimates.
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