Electronic Structure Lab

Ionization-induced structural changes in uracil dimers and their spectroscopic signatures

A.A.Zadorozhnaya and A.I. Krylov
J. Chem. Theor. Comput., submitted (2009)

Electronic structure of the three representative isomers of the ionized uracil dimers is characterized by high-level electronic structure calculations. Non-covalent interactions between the fragments lower vertical ionization energies by 0.35-0.13 eV, the largest drop being observed for the stacked and the t-shaped isomers. The initial hole is delocalized in the stacked and the h-bonded isomers, and is localized in the t-shaped one. The ionization induces significant structural relaxation and increases binding energies. The stacked dimer cation relaxes to the symmetric structure bound by 22.7 kcal/mol. The t-shaped dimer cation has binding energy of 25.1 kcal/mol. Thus, the relative order of the stacked and t-shaped isomers is reversed upon ionization. Finally, the h-bonded isomer, which relaxes to the proton-transferred structure, is bound by 37.0 kcal/mol. The electronic spectra of all three isomers characterized at the vertical and the relaxed geometries show different patterns, which may be exploited in spectroscopic probing of ionization-induced dynamics in these species.